How to cite iPTMnet and its sources

If you use iPTMnet please include this citation:

Huang H, Arighi CN, Ross KE, Ren J, Li G, Chen SC, Wang Q, Cowart J, Vijay-Shanker K, Wu CH. iPTMnet: an integrated resource for protein post-translational modification network discovery. Nucleic Acids Res. 2018 Jan 4;46(D1):D542-D550. doi: 10.1093/nar/gkx1104. PMID: 29145615; PMCID: PMC5753337.


Citations of the underlying Sources

# Name Publication PubMed
1 HPRD Prasad, T. S. K. et al. (2009) Human Protein Reference Database - 2009 Update. Nucleic Acids Research. 37, D767-72. 18988627
2 phospho.ELM Dinkel H, Chica C, Via A, Gould CM, Jensen LJ, Gibson TJ, Diella F. Nucleic Acids Res. 2011 Jan;39(Database issue) 261-7. doi: 10.1093/nar/gkq1104. 21062810
3 p3DB Yao Q, Ge H, Wu S, Zhang N, Chen W, Xu C, Gao J, Thelen JJ, Xu D. (2013) P3DB 3.0: From plant phosphorylation sites to protein networks. Nucleic Acids Res 2013. 42(Database issue):D1206-D1213 24243849
4 PhosphoGrid Stark C, Breitkreutz BJ, Reguly T, Boucher L, Breitkreutz A, Tyers M. Biogrid: A General Repository for Interaction Datasets. Nucleic Acids Res. 2006; 34:D535-9. 16381927
5 PomBase Wood V, Harris MA, McDowall MD, Rutherford K, Vaughan BW, Staines DM, Aslett M, Lock A, Bähler J, Kersey PJ, Oliver SG. PomBase: a comprehensive online resource for fission yeast. Nucleic Acids Res. 2012;40(Database issue):D695-9. Epub 2011 22039153
6 neXtProt Gaudet P, Michel PA, Zahn-Zabal M, Britan A, Cusin I, Domagalski M, Duek PD, Gateau A, Gleizes A, Hinard V, Rech de Laval V, Lin JJ, Nikitin F, Schaeffer M, Teixeira D, Lane L, Bairoch A. The neXtProt knowledgebase on human proteins: 2017 update. Nucleic Acids Res. 2017; 45(D1):D177-D182 doi:10.1093/nar/gkw1062 27899619
7 Signor Perfetto L, Briganti L, Calderone A, Cerquone Perpetuini A, Iannuccelli M, Langone F, Licata L, Marinkovic M, Mattioni A, Pavlidou T, Peluso D, Petrilli LL, Pirrò S, Posca D, Santonico E, Silvestri A, Spada F, Castagnoli L, Cesareni G. SIGNOR: a database of causal relationships between biological entities. Nucleic Acids Res. 2016;44(D1):D548-54. doi: 10.1093/nar/gkv1048 26467481
8 dbSNO Chen YJ, Lu CT, Su MG, Huang KY, Ching WC, Yang HH, Liao YC, Chen YJ, Lee TY. dbSNO 2.0: a resource for exploring structural environment, functional and disease association and regulatory network of protein S-nitrosylation. Nucleic Acids Res. 2015;43(Database issue):D503-11. doi: 10.1093/nar/gku1176. 25399423
9 PhosphoSitePlus Hornbeck PV, Zhang B, Murray B, Kornhauser JM, Latham V, Skrzypek E. PhosphoSitePlus, 2014: mutations, PTMs and recalibrations. Nucleic Acids Res. 2015;43(Database issue):D512-20. doi: 10.1093/nar/gku1267. 25514926
10 PhosPhAt Durek P, Schmidt R, Heazlewood JL, Jones A, Maclean D, Nagel A, Kersten B, Schulze WX. PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update. Nucleic Acids Res. 38: D828-D834 (2010) 17984086
11 UniProt The UniProt Consortium. UniProt: the universal protein knowledgebase Nucleic Acids Res. 45: D158-D169 (2017) 27899622
12 PRO Natale DA, Arighi CN, Blake JA, Bona J, Chen C, Chen SC, Christie KR, Cowart J, D'Eustachio P, Diehl AD, Drabkin HJ, Duncan WD, Huang H, Ren J, Ross K,Ruttenberg A, Shamovsky V, Smith B, Wang Q, Zhang J, El-Sayed A, Wu CH. Protein Ontology (PRO): enhancing and scaling up the representation of protein entities. Nucleic Acids Res.2017;45(D1):D339-D346. doi: 10.1093/nar/gkw1075. 27899649
13 RLIMS-P Torii M, Li G, Li Z, Oughtred R, Diella F, Celen I, Arighi CN, Huang H, Vijay-Shanker K, Wu CH. RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information. Database (Oxford).2014. pii: bau081. doi: 10.1093/database/bau081. 25122463
14 eFIP Wang Q, Ross KE, Huang H, Ren J, Li G, Vijay-Shanker K, Wu CH, Arighi CN. Analysis of Protein Phosphorylation and Its Functional Impact on Protein-Protein Interactions via Text Mining of the Scientific Literature. Methods Mol Biol. 2017;1558:213-232. doi: 10.1007/978-1-4939-6783-4_10. 28150240
15 SGD Paskov KM, Wong ED, Karra K, Engel SR, Cherry JM. Curated protein information in the Saccharomyces genome database. Database (Oxford). 2017 Jan 1;2017(1). doi: 10.1093/database/bax011 28365727
16 Biomuta Dingerdissen HM, Torcivia-Rodriguez J, Hu Y, Chang TC, Mazumder R, Kahsay R. BioMuta and BioXpress: mutation and expression knowledgebases for cancerbiomarker discovery. Nucleic Acids Res. 2018 Jan 4;46(D1):D1128-D1136. doi:10.1093/nar/gkx907 30053270