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Literature Corpora
| Type | Description | Tool & Publication | Links |
|---|---|---|---|
| miR-Target Relations | miR-Target Abstracts, tagged: 350 |
miRTex (Li et al., 2015) |
TAR.GZ file |
| Normalized Plant Genes |
Plant-GN Abstracts, tagged: 104 |
pGenN (Ding et al., 2015) |
ZIP file |
| Plant-GN_new Abstracts, tagged: 100 |
pGenN | ZIP file | |
| Impact of Phosphorylation on PPI | Phospho-PPI_Full-Length Article Sections: 100 |
eFIP (Tudor et al., 2015) |
ZIP file |
| Phospho-PPI_Abstract Abstracts: 96 |
eFIP (Tudor et al., 2012) |
XLSX file Annotation guidelines |
|
| PTM Information (version 3) | PTM_Phosphorylation Abstracts, tagged: 150 Articles, tagged: 105 |
RLIMS-P v.2 (Torii et al., 2014) |
TAR.GZ file |
| PTM_Acetylation Abstracts, tagged: 102 |
RLIMS-PTM |
TAR.GZ file |
|
| PTM_Glycosylation Abstracts, tagged: 107 |
RLIMS-PTM |
TAR.GZ file |
|
| PTM_Ubiquitination Abstracts, tagged: 51 |
RLIMS-PTM |
TAR.GZ file |
|
| PTM Information (version 2) | Phosphorylation_Information-Retrieval Abstracts, relevant: 110 Abstracts, irrelevant: 260 |
RLIMS-P v.1 (Hu et al., 2005) |
Dataset |
| Phosphorylation_Information-Extraction Abstracts, tagged: 59 |
RLIMS-P v.1 (Hu et al., 2005) |
Dataset Phospho Patterns |
|
| PTM Information (version 1) | PTM_Phosphorylation Abstracts, tagged: 186 Articles, tagged: 76 |
iProLINK (Hu et al., 2004) |
Abstracts Articles All |
| PTM_Acetylation Abstracts, tagged: 103 Articles, tagged: 128 |
iProLINK (Hu et al., 2004) |
Abstracts Articles All |
|
| PTM_Glycosylation Abstracts, tagged: 226 Articles, tagged: 336 |
iProLINK (Hu et al., 2004) |
Abstracts Articles All |
|
| PTM_Methylation Abstracts, tagged: 72 Articles, tagged: 69 |
iProLINK (Hu et al., 2004) |
Abstracts Articles All |
|
| PTM_Hydroxylation Abstracts, tagged: 71 Articles, tagged: 133 |
iProLINK (Hu et al., 2004) |
Abstracts Articles All |
|
| Tagged Proteins | Protein_Tags_1 Abstracts: 300 |
iProLINK (Hu et al., 2004) |
XML File Annotation guidelines |
| Protein_Tags_2 Abstracts: 300 |
iProLINK (Hu et al., 2004) | XML File Annotation guidelines |
|
| PPI Passages | BioCreative V BioC task supplementary materials Articles, tagged: 20 Source code |
BC5 BioC Database (Peng et al., 2016) |
Articles source code Trigger List |
| UniProt Additional Bibliography | Aboutness of PMID and UniProt AC Abstracts: 334 |
eGenPub | ZIP File |
| Variant-Impact Relations | Variant-Impact relations in Alzheimer's disease and other dementias Abstracts: 60 |
eMIND | Readme Annotated corpus (ZIP) Annotation guidelines |
