ngsShoRT- A Next Generation Sequencing Short Read Trimmer

Useful Links

  1. EBI's Velvet assembler page:

    (You can subscribe to the very useful Velvet mailing list from there)

  2. BGI's SOAPdenovo assembler page:

  3. NCBI's Short Read Archive Website for all genome/transcriptome studies submitted to NCBI:

    This is the website that we used to download sample data for ngsShoRT. Some of the tested genomes/transcriptomes include:

    Note that the downloaded files are .sra; you ll need SRAToolKit to extract fastq or qseq files from them