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Literature Corpora

Type Description Tool & Publication Links
miR-Target Relations miR-Target
Abstracts, tagged: 350
miRTex TAR.GZ file
Normalized
Plant Genes
Plant-GN
Abstracts, tagged: 104
pGenN ZIP file
Impact of Phosphorylation on PPI Phospho-PPI_Full-Length
Article Sections: 100
eFIP
(Tudor et al., 2015)
ZIP file
Phospho-PPI_Abstract
Abstracts: 96
eFIP
(Tudor et al., 2012)
XLSX file
Annotation guidelines
PTM Information (version 3) PTM_Phosphorylation
Abstracts, tagged: 150
Articles, tagged: 105
RLIMS-P v.2
(Torii et al., 2014)
TAR.GZ file
PTM_Acetylation
Abstracts, tagged: 102
RLIMS-PTM
TAR.GZ file
PTM_Glycosylation
Abstracts, tagged: 107
RLIMS-PTM
TAR.GZ file
PTM_Ubiquitination
Abstracts, tagged: 51
RLIMS-PTM
TAR.GZ file
PTM Information (version 2) Phosphorylation_Information-Retrieval
Abstracts, relevant: 110
Abstracts, irrelevant: 260
RLIMS-P v.1
(Hu et al., 2005)
Dataset
Phosphorylation_Information-Extraction
Abstracts, tagged: 59
RLIMS-P v.1
(Hu et al., 2005)
Dataset
Phospho Patterns
PTM Information (version 1) PTM_Phosphorylation
Abstracts, tagged: 186
Articles, tagged: 76
iProLINK
(Hu et al., 2004)
Abstracts
Articles
All
PTM_Acetylation
Abstracts, tagged: 103
Articles, tagged: 128
iProLINK
(Hu et al., 2004)
Abstracts
Articles
All
PTM_Glycosylation
Abstracts, tagged: 226
Articles, tagged: 336
iProLINK
(Hu et al., 2004)
Abstracts
Articles
All
PTM_Methylation
Abstracts, tagged: 72
Articles, tagged: 69
iProLINK
(Hu et al., 2004)
Abstracts
Articles
All
PTM_Hydroxylation
Abstracts, tagged: 71
Articles, tagged: 133
iProLINK
(Hu et al., 2004)
Abstracts
Articles
All
Tagged Proteins Protein_Tags_1
Abstracts: 300
iProLINK
(Hu et al., 2004)
XML File
Annotation guidelines
Protein_Tags_2
Abstracts: 300
iProLINK
(Hu et al., 2004)
XML File
Annotation guidelines
PPI Passages BioCreative V BioC task supplementary materials
Articles, tagged: 20
Source code
BC5 BioC Database link
University of Delaware
15 Innovation Way, Suite 205
Newark, DE 19711, USA
Georgetown University Medical Center
3300 Whitehaven Street, NW, Suite 1200
Washington, DC 20007, USA