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Literature Corpora

Type Description Tool & Publication Links
miR-Target Relations miR-Target
Abstracts, tagged: 350
miRTex
(Li et al., 2015)
TAR.GZ file
Normalized
Plant Genes
Plant-GN
Abstracts, tagged: 104
pGenN
(Ding et al., 2015)
ZIP file
Plant-GN_new
Abstracts, tagged: 100
pGenN ZIP file
Impact of Phosphorylation on PPI Phospho-PPI_Full-Length
Article Sections: 100
eFIP
(Tudor et al., 2015)
ZIP file
Phospho-PPI_Abstract
Abstracts: 96
eFIP
(Tudor et al., 2012)
XLSX file
Annotation guidelines
PTM Information (version 3) PTM_Phosphorylation
Abstracts, tagged: 150
Articles, tagged: 105
RLIMS-P v.2
(Torii et al., 2014)
TAR.GZ file
PTM_Acetylation
Abstracts, tagged: 102
RLIMS-PTM
TAR.GZ file
PTM_Glycosylation
Abstracts, tagged: 107
RLIMS-PTM
TAR.GZ file
PTM_Ubiquitination
Abstracts, tagged: 51
RLIMS-PTM
TAR.GZ file
PTM Information (version 2) Phosphorylation_Information-Retrieval
Abstracts, relevant: 110
Abstracts, irrelevant: 260
RLIMS-P v.1
(Hu et al., 2005)
Dataset
Phosphorylation_Information-Extraction
Abstracts, tagged: 59
RLIMS-P v.1
(Hu et al., 2005)
Dataset
Phospho Patterns
PTM Information (version 1) PTM_Phosphorylation
Abstracts, tagged: 186
Articles, tagged: 76
iProLINK
(Hu et al., 2004)
Abstracts
Articles
All
PTM_Acetylation
Abstracts, tagged: 103
Articles, tagged: 128
iProLINK
(Hu et al., 2004)
Abstracts
Articles
All
PTM_Glycosylation
Abstracts, tagged: 226
Articles, tagged: 336
iProLINK
(Hu et al., 2004)
Abstracts
Articles
All
PTM_Methylation
Abstracts, tagged: 72
Articles, tagged: 69
iProLINK
(Hu et al., 2004)
Abstracts
Articles
All
PTM_Hydroxylation
Abstracts, tagged: 71
Articles, tagged: 133
iProLINK
(Hu et al., 2004)
Abstracts
Articles
All
Tagged Proteins Protein_Tags_1
Abstracts: 300
iProLINK
(Hu et al., 2004)
XML File
Annotation guidelines
Protein_Tags_2
Abstracts: 300
iProLINK
(Hu et al., 2004)
XML File
Annotation guidelines
PPI Passages BioCreative V BioC task
supplementary materials

Articles, tagged: 20
Source code
BC5 BioC Database
(Peng et al., 2016)
Articles
source code
Trigger List
UniProt Additional Bibliography Aboutness of PMID and UniProt AC
Abstracts: 334
eGenPub ZIP File
University of Delaware
15 Innovation Way, Suite 205
Newark, DE 19711, USA
Georgetown University Medical Center
3300 Whitehaven Street, NW, Suite 1200
Washington, DC 20007, USA