[Term]
id: PR:000023895
name: 23S rRNA (uracil-5-)-methyltransferase rumA
def: "A protein that is a translation product of the Escherichia coli K-12 rumA gene or a 1:1 ortholog thereof." [PRO:DNx]
comment: Category=gene.
synonym: "rumA" EXACT PRO-short-label [PRO:DNx]
synonym: "ygcA" RELATED []
synonym: "23S rRNA(M-5-U1939)-methyltransferase" EXACT []
is_a: PR:000000001 ! protein

[Term]
id: PR:P55135
name: 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD (Escherichia coli K-12)
def: "A 23S rRNA (uracil-5-)-methyltransferase rumA that is encoded in the genome of Escherichia coli K-12." [PRO:DNx, UniProtKB:P55135]
comment: Category=organism-gene.
synonym: "rlmD" RELATED Gene-based [UniProtKB:P55135]
synonym: "rumA" RELATED Gene-based [UniProtKB:P55135]
synonym: "ygcA" RELATED Gene-based [UniProtKB:P55135]
synonym: "b2785" RELATED Gene-based [UniProtKB:P55135]
synonym: "JW2756" RELATED Gene-based [UniProtKB:P55135]
synonym: "Ec-rumA" EXACT PRO-short-label [PRO:DNx]
synonym: "23S rRNA(m5U1939)-methyltransferase (Escherichia coli K-12)" EXACT [UniProtKB:P55135]
xref: EcoCyc:EG11247-MONOMER
xref: UniProtKB:P55135
intersection_of: only_in_taxon NCBITaxon:83333 ! Escherichia coli K-12
intersection_of: PR:000023895 ! 23S rRNA (uracil-5-)-methyltransferase rumA
relationship: has_gene_template EcoGene:EG11247 ! rumA (Escherichia coli K-12)

[Term]
id: PR:000024746
name: 23S rRNA (uracil-5-)-methyltransferase rumA, initiator methionine removed form
def: "A 23S rRNA (uracil-5-)-methyltransferase rumA that has had the initiator methionine removed." [PRO:DNx]
comment: Category=modification.
synonym: "rumA/InitMet-" EXACT PRO-short-label [PRO:DNx]
intersection_of: lacks_part PR:000021937 ! initiator methionine
intersection_of: PR:000023895 ! 23S rRNA (uracil-5-)-methyltransferase rumA

[Term]
id: PR:P33753
name: tRNA (uracil(54)-C(5))-methyltransferase (yeast)
def: "A 23S rRNA (uracil-5-)-methyltransferase rumA that is encoded in the genome of yeast." [OMA:P33753, PRO:DNx]
comment: Category=organism-gene.
synonym: "NUC2" RELATED Gene-based [UniProtKB:P33753]
synonym: "NUD1" RELATED Gene-based [UniProtKB:P33753]
synonym: "RNC1" RELATED Gene-based [UniProtKB:P33753]
synonym: "TRM2" RELATED Gene-based [UniProtKB:P33753]
synonym: "yrumA" EXACT PRO-short-label [PRO:DNx]
synonym: "YKR056W" RELATED Gene-based [UniProtKB:P33753]
synonym: "tRNA(m5U54)-methyltransferase (yeast)" EXACT [UniProtKB:P33753]
synonym: "transfer RNA methyltransferase 2 (yeast)" EXACT [UniProtKB:P33753]
xref: UniProtKB:P33753
intersection_of: only_in_taxon NCBITaxon:559292 ! Saccharomyces cerevisiae S288C
intersection_of: PR:000023895 ! 23S rRNA (uracil-5-)-methyltransferase rumA
relationship: has_gene_template SGD:S000001764 ! TRM2 (yeast)

[Term]
id: PR:Q09833
name: tRNA (uracil(54)-C(5))-methyltransferase (Schizosaccharomyces pombe 972h-)
def: "A 23S rRNA (uracil-5-)-methyltransferase rumA that is encoded in the genome of Schizosaccharomyces pombe 972h-." [OMA:Q09833, PRO:DNx]
comment: Category=organism-gene.
synonym: "SPAC4G8.07c" RELATED Gene-based [UniProtKB:Q09833]
synonym: "Spom972h-rumA" EXACT PRO-short-label [PRO:DNx]
xref: UniProtKB:Q09833
intersection_of: only_in_taxon NCBITaxon:284812 ! Schizosaccharomyces pombe 972h-
intersection_of: PR:000023895 ! 23S rRNA (uracil-5-)-methyltransferase rumA
relationship: has_gene_template PomBase:SPAC4G8.07c ! SPAC4G8.07c (Schizosaccharomyces pombe)